Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015880531.1_cds_XP_016437511.1_33264
CDS Infomation

[gene=LOC107763539] [db_xref=GeneID:107763539] [protein=replication factor C subunit 1-like] [protein_id=XP_016437511.1] [location=join(11331..11333,12419..12535,14045..14620,14703..14770,15002..15077,15152..15213,15302..15438,18288..18451,18548..18736,18850..18971,19042..19249,19599..19652,20209..20378,21324..21414,22399..22580,22675..22714,23096..23220,23869..23941,24016..24108,24197..24440,24803..24850,24981..25135)] [gbkey=CDS]
Sequence

ATGTCAGATATCAGAAAATGGTTCATGAAGCAGCATGACAAAGGTACGGGTAATGGGAGT
ATGTCCAAGAATAGTGCTCCAGAAAAGCCTTCAGCAGAAAAGTCTCCTCCAGGAAACCTG
GTACAAGAAGGACAAGAGACTGCCGGCAGAAGGAAAACTAGTAAATATTTTGCTACAGAC
AAGGTGAAGGCAAAAGAAGAAAAAGTAGAGGAAGTATCAGCAAAAAGAAAAGCTCAAAAT
GCTGGTGGAAGTTCATCAGTTAATGAGAAGCCACCAGCTGCGAAAAGAATTCACAAAGCT
GAGGATGACGATGACTTTGTACTGCCTGCATCTGCAATGGGATCCAGAGGTGCCACTCCC
ACCAAAAAGTCGGCAAGTGGCTCTGGAAGGGGATCTGCACGGAAGTATGTGATCAGTGAT
GAAAGTGACGATGATCTTAAGGATACAAAATCTGATCCCAAACCTACTGGAAGAGGGCGT
GGTGGACGAGCAGCTCAGACTGGTGGAAAAGGCATCCCTCTTGATGAAAGTGATGATGAT
GCCTCAGCTGATAAGGACACCAAATCTGGTGGACGAGGGCGTGGTGGTAAAGGACCATCT
GCAGCACCAAGTGGTGGACGAGGCAGAGGTGGTGGAGGACGGGGCGGTTTCATGAATTTT
GGTGAAAGAAAAGACCCTCCTCACAAGGGGGAAAAGGAAGTTCCTGAAGGTGCCCCAAAC
TGTTTAGCTGGTTTGACTTTTGTAATTAGTGGAACTCTGGACAGTTTAGAAAGAGAAGAA
GCTGAGGATTTGATTAAACGCCATGGTGGTCGTGTTACAGGATCTGTTAGCAAGAAAACG
AATTATCTTTTATGCGATGAAGACATCGAGGGACGGAAATCCTCTAAAGCCAAGGAACTC
GGAACTGCATTTCTCACTGAGGATGGTTTGTTCAATATGATCCGGTCATCAAAGAAATCA
AAATCAGCTACACAGCCCGAGTCAAAGAAATCAGTGGCCACTGTTGTTTCTCCTGCAAAG
AGAAATTCACAAAATACAAGTGATGGAACTGGAAGCACTGCCACAAAGATTTTAGCTGCC
AAAGAATTGACACCTAGTGCATCTCCTGCCAAGAGGAAAGGCCAAGCTAAAGAGTCTTCA
CTACCATGGACAGAAAAATACAGGCCCAAAGCTATTGTAGACATAATAGGGAATAAGTCA
CTGGTAGAACAGATTCAGCGTTGGCTGGAGAGCTGGGATGAGCATTTTCTAAATGCAGCT
AGTAAGGGGAAGGGGAAAAAACAGAATGACTCTGGTGCTAAAAAGGCAGTTCTGTTGAGT
GGTATGCCGGGTATAGGGAAGACTACATCAGCAAAGGTGGTTAGTCAGCTACTGGGTTTC
CAAACTATCGAGGTAAATGCTAGTGATAGTCGTGGAAAGGCTGATTCAAAAATTGAGAAA
GGAATTGGTGGTAGTACTGCAAATTCCATAAAAGAACTTGTTAGCAATGAATCCCTAGGT
GCTAATATTGGCAGATTGCACCATCAGAAGACTGTTCTGATTATGGATGAGGTTGATGGC
ATGTCTGCTGGAGATAGAGGTGGTGTTGCCGATCTTATTGCTAGCATCAAGTTATCCAAA
ATTCCTATTATCTGCATTTGTAATGATCGCTACAGTCAGAAATTGAAGAGCCTTGTCAAT
TATTGCTTACCAATTGTCTTCCGAAAACCGACTAAACAGCAGATGGCAAAAAGGTTAAAG
CAAGTGGCAAATGCTGAAGGCCTTCAAGTCAATGAGATTGCTCTTGAGGAATTGGCAGAA
CGTGTTGGTGGCGATATGCGTATGGCTCTAAATCAATTGCAATACATGAGTCTCTCTAAG
TCTGTGATCCAATACGATGATATAAGACAGCGCCTTCTAAGCAGTTCAAAGGATGAAGAC
ATCTCACCCTTCAAAGCTGTCGAACTGTTGTTTGATTTTAATGCCAAGAACTTGAAAATA
GATCGAAGAATTGATCTAAGTATGAGTGACCCAGATCTTGTCCCGCTTCTTATACAGGAG
AACTATCTCAATTACAAGCCAAGTTCTGTTGGCAAAGATGATGATGGTTTAAAGCGGATG
AGCCTAATTGCACGTGCTGCTGACTCTATTGCAAATGGTGATTTAATAAATGTACAGATT
CGTAGATACCAGCAGTGGCAACTATCTCCAGCTGGTTGCCTTTCGTCTTGCATTATTCCT
GCTTCGTTGTTGCATGGACAGAGGCAGACTCTTGAGCAGGGAGAACGCAACTTTAATAGG
TTTGGTGGCTGGCTAGGAAAGAACTCTACAATGGGAAAGAATTACCGGATTTTGGAGGAC
TTGCATGTTCACCTACTCGCTTCTCGTGAATCATATTTGGGAAGGGCAAACCTGAGACTT
GACTACTTTACTCTTCTTACAAAGAAGTTGACAGATCCATTAAAACTGCTACCTAAGGAT
GAAGCTGTCGAGAACGTTGTGGATTTCATGGATTCGTACTCTATAAGCCAGGATGACTTC
GATAATATTGTGGAGATATCAAAATTCAAGGGACATCCGAATCCACTGGATGGTATTCAG
CCTGTTGTGAAAGCTGCACTGACAAGGGCATACAACAAAGGAAGCAAATCACGTGTTATT
CGCACAGCAGATTTAATATCCCTTCCTGGAATTAAAAAAGCTCCCAAGAAGCGGGTTGCA
GCGATGCTGGAGCCACTAGATGAAGGCTTAGCTGAAGAAAATGGTGAAGCAATTGCTGAA
GATGAAGAGAACTCATCAGAGCCAGAGGATATAGATGTTGAGAAAAAGTTGGAGTCAGAT
CTTCAGAGTCTCAATTCTAAGGGAATCCAAGTAAATGTAGATCTGAAGGGTGCTGGTGGA
AAGAAGCCGTCTGCTGGAAGAGGAAGAGGAAGTTCTAGTAGCAGGGAGAAAGGAGGTGCT
GAATCCTCGAGCAAGAGAGGTGGCCGGGGTTCTGGAGCTACCAAGAGAAAGAGGTGA

Peptide Sequence

PEP ID

XP_016437511.1
PEP Infomation

PREDICTED: replication factor C subunit 1-like [Nicotiana tabacum]
Sequence

MSDIRKWFMKQHDKGTGNGSMSKNSAPEKPSAEKSPPGNLVQEGQETAGRRKTSKYFATD
KVKAKEEKVEEVSAKRKAQNAGGSSSVNEKPPAAKRIHKAEDDDDFVLPASAMGSRGATP
TKKSASGSGRGSARKYVISDESDDDLKDTKSDPKPTGRGRGGRAAQTGGKGIPLDESDDD
ASADKDTKSGGRGRGGKGPSAAPSGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEGAPN
CLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIEGRKSSKAKEL
GTAFLTEDGLFNMIRSSKKSKSATQPESKKSVATVVSPAKRNSQNTSDGTGSTATKILAA
KELTPSASPAKRKGQAKESSLPWTEKYRPKAIVDIIGNKSLVEQIQRWLESWDEHFLNAA
SKGKGKKQNDSGAKKAVLLSGMPGIGKTTSAKVVSQLLGFQTIEVNASDSRGKADSKIEK
GIGGSTANSIKELVSNESLGANIGRLHHQKTVLIMDEVDGMSAGDRGGVADLIASIKLSK
IPIICICNDRYSQKLKSLVNYCLPIVFRKPTKQQMAKRLKQVANAEGLQVNEIALEELAE
RVGGDMRMALNQLQYMSLSKSVIQYDDIRQRLLSSSKDEDISPFKAVELLFDFNAKNLKI
DRRIDLSMSDPDLVPLLIQENYLNYKPSSVGKDDDGLKRMSLIARAADSIANGDLINVQI
RRYQQWQLSPAGCLSSCIIPASLLHGQRQTLEQGERNFNRFGGWLGKNSTMGKNYRILED
LHVHLLASRESYLGRANLRLDYFTLLTKKLTDPLKLLPKDEAVENVVDFMDSYSISQDDF
DNIVEISKFKGHPNPLDGIQPVVKAALTRAYNKGSKSRVIRTADLISLPGIKKAPKKRVA
AMLEPLDEGLAEENGEAIAEDEENSSEPEDIDVEKKLESDLQSLNSKGIQVNVDLKGAGG
KKPSAGRGRGSSSSREKGGAESSSKRGGRGSGATKRKR

Transcript Sequence

Gene sequence data has not been registered.